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Target needs to be complete genome. -repMatch=N sets the number of repetitions of a tile allowed before it is marked as overused. Typically this is 256 for tileSize 12, 1024 for tile size 11, 4096 for tile size 10. Default is 1024. Typically only comes into play with makeOoc. Also affected by stepSize. When stepSize is halved repMatch is doubled to compensate. -mask=type Mask out repeats. Alignments won't be started in masked region but may extend through it in nucleotide searches. Masked areas are ignored entirely in protein or translated searches. Types are lower - mask out lower cased sequence upper - mask out upper cased sequence out - mask according to database.out RepeatMasker .out file file.out - mask database according to RepeatMasker file.out -qMask=type Mask out repeats in query sequence. Similar to -mask above but for query rather than target sequence. -repeats=type Type is same as mask types above. Repeat bases will not be masked in any way, but matches in repeat areas will be reported separately from matches in other areas in the psl output. -minRepDivergence=NN - minimum percent divergence of repeats to allow them to be unmasked. Default is 15. Only relevant for masking using RepeatMasker .out files. -dots=N Output dot every N sequences to show program's progress -trimT Trim leading poly-T -noTrimA Don't trim trailing poly-A -trimHardA Remove poly-A tail from qSize as well as alignments in psl output -fastMap Run for fast DNA/DNA remapping - not allowing introns, requiring high %%ID -out=type Controls output file format. Type is one of: psl - Default. Tab separated format, no sequence pslx - Tab separated format with sequence axt - blastz-associated axt format maf - multiz-associated maf format sim4 - similar to sim4 format wublast - similar to wublast format blast - similar to NCBI blast format blast8- NCBI blast tabular format blast9 - NCBI blast tabular format with comments -fine For high quality mRNAs look harder for small initial and terminal exons. Not recommended for ESTs -maxIntron=N Sets maximum intron size. Default is %d -extendThroughN - Allows extension of alignment through large blocks of N's Query sequence %s has size %d, it might take a while.%s: Can't use .nib files with -prot or d=prot option %s is a two bit file, which doesn't work for proteins.Searched %lu bases in %d sequences Blatx %d sequences in database, %d files in query Unrecognized combination of target and query types Illegal value for 't' parameterd and q must both be either protein or dnaThe -mask and -repeat settings disagree. You can just omit -repeat if -mask is on A$Id: fuzzyFind.c,v 1.17 2006/05/09 01:05:55 markd Exp $ffFind?fuzzyFind.cneedleStart <= needleEndhayStart <= hayEnd$Id: genoFind.c,v 1.23 2007/02/04 05:09:02 kent Exp $gfHitSort2Couldn't finish large readCounting tiles in %s Adding tiles in %s Unrecognized file type %s%s:%sDone addingCounting %s Indexing %s Couldn't find source for %d%u-%u %s %u-%u, hits %d genoFind.ctmp + n1 + n2 == nosTemp + nLoading %s Writing %s protein tileSize must be between 3 and 8DNA tileSize must be between 6 and 18Don't yet support ooc on large tile sizesSorry, can only index up to %lld bases, %s has %lldDon't currently support allowOneMismatch in gfIndexNibsAndTwoBitsExceeding 4 billion bases, sorry gfServer can't handle that.Don't currently support allowOneMismatch in gfIndexTransNibsAndTwoBitsDon't yet know how to make ooc files for large tile sizes.Wrote %d overused %d-mers to %s Bad char in reverse primer sequence: %sCan't do PCR on large tile sizesCan't do PCR on protein/translated index$Id: gfBlatLib.c,v 1.25 2007/04/20 22:44:11 kent Exp $gfQuerySeqTransgfQuerySeqTransTransclumpToHspRange%s%s %dcouldn't process %s: %squeryError:gfBlatLib.cInternal error %s %dprotQuerytransQueryrange->tEnd <= tSeq->sizeExpecting 'Y' from server, got %cExpecting 6 words from server got %dExpecting 8 words from server got %dslCount(clump->hitList) == clump->hitCountExpecting 9 words from server got %dEmpty mask file %s There were no SWscore%s.out%s isn't a RepeatMasker .out file.%s line %d - error in repeat mask .out file %s is in %s but not corresponding sequence file, files out of sync? Repeat mask sequence out of range (%d-%d of %d in %s) Loaded %lu letters in %d sequences $Id: gfInternal.c,v 1.3 2006/06/22 16:24:44 kent Exp $Expecting colon in %sNo colon in .2bit response from gfServer$Id: gfOut.c,v 1.16 2006/06/22 16:24:44 kent Exp $saveAxtBundle%d %d %d %d %d %d %d %d %c %s %d %d %d %s %d %d %d %d %ld,%d,Write error to .pslNegative gap size in %s vs %sgfOut.cblastzseq1 = %s, %d bp seq2 = %s, %d bp (complement) %d-%d (%d-%d) %1.0f%% <- -> blatwublastblast8blast9xmlpslxsim4axtt->stringSize == q->stringSizesim4 output is not available for protein query sequences.Unrecognized output format '%s'B$Id: ooc.c,v 1.2 2003/09/09 21:44:02 kent Exp $rbBad signature on %s Oligo size mismatch in %s. Expecting %d got %d $Id: supStitch.c,v 1.38 2007/04/20 22:43:37 kent Exp $ssGraphMake(%ld - %ld)[%ld-%ld] supStitch.cnot monotonic dn %d, dh %d edgeCount <= maxEdgeCounttSeqBundle of %d between %s and %s $Id: trans3.c,v 1.5 2007/04/20 22:43:37 kent Exp $trans3.c$Id: ffAliHelp.c,v 1.10 2005/11/20 19:24:57 kent Exp $$Id: ffSeedExtend.c,v 1.36 2006/06/22 16:24:43 kent Exp $ffSeedExtend.cUnable to peel in hardRefineSplice @??$Id: patSpace.c,v 1.3 2006/03/15 18:36:16 angie Exp $bfFindToo many blocks, can only handle %d block >= 0 && block < (2*230*1024 - 1)patSpace.c$Id: bandExt.c,v 1.13 2006/03/14 19:02:31 angie Exp $bandExtbandExt.cglobalunsufficient symAlloc in bandExt$Id: aliType.c,v 1.4 2003/05/06 07:33:41 kate Exp $DNARNAproteinDNAXRNAXaliType.cUnknown sequence type '%s'$Id: axt.c,v 1.47 2006/06/18 23:11:58 kate Exp $axtSwapaxtAddBlocksToBoxInListExpecting at least 8 words line %d of %s got %d Symbol count %d != %d inconsistent between sequences line %d and prev line of %sSymbol count %d != %d || %d > %d inconsistent in %s in record %d. %d non-dashes, but %d bases to cover at line %d of %sScoring matrix file %s too short Expecting letter and 25 numbers line %d of %sNot a good protein matrix - expecting 24 letters line %d of %sNot a good protein matrix - got word not letter line %d of %s%s doesn't seem to be a score matrix fileExpecting O = and E = in last line of %s##matrix=%s 16 %d,%d,%d,%d,%d,%d,%d,%d,%d,%d,%d,%d,%d,%d,%d,%d %d %s %d %d %s %d %d %cUnexpected end of %sblosum62 =, Must have positive gap scores##gapPenalties=%s O=%d E=%d ##blastzParms=%s axt.caxt->tStrand != '-'size == tPos - tStart%0*d %0*d $Id: bits.c,v 1.19 2006/02/28 05:40:46 markd Exp $$Id: binRange.c,v 1.20 2006/07/01 05:01:25 kent Exp $binOffsetExtendedbinOffsetbinKeeperAddbinRange.cbin < bk->binCountlevel >= 0 && level < (sizeof(binOffsetsExtended)/sizeof((binOffsetsExtended)[0]))level >= 0 && level < (sizeof(binOffsets)/sizeof((binOffsets)[0]))start %d, end %d out of range in findBin (max is 512M)start %d, end %d out of range in findBin (max is 2Gb)bad range %d,%d in binKeeperNew(%d %d) out of range (%d %d) in binKeeperAdd$Id: blastOut.c,v 1.26 2006/03/10 17:43:36 angie Exp $㥛 ?pΈ?b4@@ˡE?hs?+?0.++@?^2OQuery: %-*d %-d %*s Sbjct: %-*d MinusPlusTBLASTNtblastnBLASTPblastpaxtBlastOut%s 2.0MP-WashU [%s] All Rights Reserved Query= %s Database: %s %-61s %4d %8.1e %2d >%s %s Strand HSPs: , Frame = %c%d, Strand = %s / Plus 0.0%e%1.0e%s 2.2.11 [%s] Query= %s (%d letters) Database: %s Searching.done %-67s %4d >%s Length = %d Identities = %d/%d (%d%%), Positives = %d/%d (%d%%), Gaps = %d/%d (%d%%) Frame = %c%d Identities = %d/%d (%d%%) Strand = %s / %s Database: %s %s $Date: 2006/03/10 17:43:36 $33x7# BLAT %s [%s] # Query: %s # Database: %s %s %.2f %3.1e %d.0 Copyright (C) 2000-2002 Jim Kent Reference: Kent, WJ. (2002) BLAT - The BLAST-like alignment tool Notice: this program and its default parameter settings are optimized to find nearly identical sequences very rapidly. For slower but more sensitive alignments please use other methods. (%d letters; record %d) %d sequences; %s total letters Searching....10....20....30....40....50....60....70....80....90....100%% done Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N Score = %d (%2.1f bits), Expect = %5.1e, P = %5.1e Identities = %d/%d (%d%%), Positives = %d/%d (%d%%) Score E Sequences producing significant alignments: (bits) Value Score = %d bits (%d), Expect = %s %s 2.2.4 [%s] ~Reference: Kent, WJ. (2002) BLAT - The BLAST-like alignment tool %s %d %s %d BLOSUM62 0.001 10 1 1 %d %s %d %d %d %d %f %d %d %d %d # Fields: Query id, Subject id, % identity, alignment length, mismatches, gap openings, q. start, q. end, s. start, s. end, e-value, bit scoreUnrecognized blastType %s in axtBlastOut$Id: chain.c,v 1.25 2007/02/19 18:29:32 kent Exp $chain %1.0f %s %d + %d %d %s %d %c %d %d %d Expecting at least 12 words line %d of %sExpecting 'chain' line %d of %sEnd before start line %d of %sStart before zero line %d of %sPast end of sequence line %d of %sExpecting 1 or 3 words line %d of %s q end mismatch %d vs %d line %d of %s t end mismatch %d vs %d line %d of %s Duplicate chain %d ending line %d of %schain::chainRangeQPlusStrand() - Can't find range in null query chain. %d %dchain$Id: chainBlock.c,v 1.17 2005/04/10 14:41:21 markd Exp $%d %f %d %d %d gap %d %d $Id: common.c,v 1.108 2007/03/30 00:12:11 markd Exp $Can't take median of empty listString too long in writeString (%d chars): %sOut of memory in readline - request size %d bytesbuffer overflow, size %d, format: %sbuffer overflow, size %lld, string size: %lldbuffer overflow, size %lld, substring size: %lldbuffer overflow, size %lld, new string size: %lld to read to write to appendCan't open %s%s: %sError writing %lld bytes: %s Error reading %lld bytes: %sCouldn't read string%s%sfclose failedn/atruefalse: %ld millis
$Id: dlist.c,v 1.11 2005/07/04 18:44:09 markd Exp $$Id: dnaseq.c,v 1.19 2005/11/10 03:40:34 kent Exp $translateSeqNdnaseq.coffset <= inSeq->sizeactualSize <= inSize/3+1$Id: dnautil.c,v 1.49 2007/03/14 04:54:55 kent Exp $valToCodoncheckSizeTypestttttcttattgtcttcctcatcgtattactaatagtgttgctgatggcttctcctactgcctcccccaccgcatcaccaacagcgtcgccgacggattatcataatgactaccacaacgaataacaaaaagagtagcagaagggttgtcgtagtggctgccgcagcggatgacgaagagggtggcggagggdnautil.cval >= 0 && val < 64cysteineaspartic acidglutamic acidphenylalanineglycinehistidineisoleucinelysinemethionineasparagineprolineglutaminearginineserinethreoninevalinetryptophantyrosine$Id: dystring.c,v 1.22 2006/02/02 16:24:24 kent Exp $dyStringCannibalizedystring.cds != ((void *)0)$Id: errabort.c,v 1.13 2004/11/10 00:10:50 markd Exp $debugAbort%s %sToo many popWarnHandlers ERRASSERTERRABORTToo many popAbortHandlers errabort.cToo many pushWarnHandlers, can only handle %d Too many pushAbortHandlers, can only handle %d $Id: fa.c,v 1.37 2007/02/20 18:50:21 kent Exp $read of fasta file failedfseek on fasta file failedcan't open %sExpecting '>' line %d of %s%s duplicated in %sInvalid fasta format: sequence size == 0 for element %sNo name in line starting with '>'expandFaFastBuf: integer overflow when trying to increase buffer size from %u to a min of %u.Expecting sequence name after '>' line %d of %s$Id: ffAli.c,v 1.9 2004/02/13 09:33:32 kent Exp $$Id: ffScore.c,v 1.5 2003/10/21 22:06:32 kent Exp $Unknown stringency type %dDirectory too long in %sName too long in %sExtension too long in %s../More ..'s in "%s" than directories in "%s"$Id: hash.c,v 1.36 2007/04/14 17:07:27 markd Exp $newHash%s duplicated, aborting%s not foundhash.cattempt to remove non-existant %s from hashpowerOfTwoSize <= 24 && powerOfTwoSize > 0$Id: linefile.c,v 1.54 2007/03/23 08:12:42 kent Exp $lineFileExpandBufBZsomefile.%sgzip-dccompressbzip2.gz.Z.bz2linefile.cnewSize > lf->bufSizeCouldn't open %s , %sCouldn't lineFileSeek %sError line %d of %s: Unexpected end of file in %sShort line %d of %sPremature end of file in %sHTTP/Transfer-Encoding: chunkedContent-Length:discarding footer line: %s Can't lineFileSeek on a compressed file: %sLine too long (more than %d chars) line %d of %sExpecting %d words line %d of %s got %dExpecting at least %d words line %d of %s got %dExpecting number field %d line %d of %s, got %sExpecting double field %d line %d of %s, got %s%s: Expecting HTTP/ header line, got this: %s %s: Errored HTTP response header: %s %s %s %s: chunked transfer-encoding: expected blank line, got %s %s: chunked transfer-encoding chunk size parse error. %s: chunked transfer-encoding: got footer %s, discarding it. $Id: localmem.c,v 1.10 2005/04/11 07:20:03 markd Exp $Couldn't allocate %lld bytes$Id: maf.c,v 1.34 2007/04/12 18:54:23 rico Exp $mafColumnEmpty##maf%s does not start with %sscoringNo version line 1 of %s Couldn't open %s Unexpected end of file %s##maf version=1 scoring=%sa score=%f defaultNamee %-*s %*d %*d %c %*d %c s %-*s %*d %*d %c %*d %s q %-*s %s i %-*s %c %d %c %d Couldn't find %s in mafCouldn't find %s%s... in mafmaf.ccol < maf->textSizeMissing = after %s line 1 of %s maf file rewind failed -- file not openMissing = after %s line 1 of %sText size inconsistent (%d vs %d) line %d of %sGot a negative size line %d of %sCoordinates out of range line %d of %si line src mismatch: i is %s :: s is %s q line src mismatch: q is %s :: s is %s Couldn't find %s%c or just %s... in maf$Id: mafFromAxt.c,v 1.4 2003/05/17 23:47:15 kent Exp $%s.%s$Id: memalloc.c,v 1.30 2007/03/07 01:46:43 angie Exp $Too many popMemHandlers()needLargeMem: trying to allocate %llu bytes (limit: %llu)needLargeMem: Out of memory - request size %llu bytes needLargeMemResize: trying to allocate %llu bytes (limit: %llu)needLargeMemResize: Out of memory - request size %llu bytes needHugeMem: trying to allocate 0 bytesneedHugeMen: Out of huge memory - request size %llu bytes needHugeMemResize: Out of memory - request resize %llu bytes needMem: trying to allocate %llu bytes (limit: %llu)needMem: Out of memory - request size %llu bytes Allocated too much memory - more than %s bytes (%s)Bad start cookie %x freeing %llx Bad end cookie %x%x%x%x freeing %llx Bad start cookie %x checking %llx Bad end cookie %x%x%x%x checking %llx Loop or more than 10000000 pieces in memory listmultiple memTrackerStart callsmemTrackerEnd without memTrackerStart$Id: net.c,v 1.55 2006/10/06 22:17:38 hiram Exp $Couldn't make AF_INET socket.NULL hostName in netConnectCouldn't connect to %s %dr+Couldn't finish netReadAllUrl too long: '%s'%20httpftpx@genome.ucsc.eduNon-numeric port name %sselect failure in rudp: %sUSER %s PASS %s TYPE I PASV RETR %s %s %s %s User-Agent: %s Host: %s Host: %s:%s Authorization: Basic %s Accept: */* genome.ucsc.edu/net.cHTTP/1.0GETHEADhttp://ftp://30LocationStrange http header on %s %s: %s %s Couldn't open %sCouldn't read string lengthCouldn't read string bodyGET %s HTTP/1.1 Connection: Keep-Alive Connection: Persist Connection: close netConnectTo: ports must be numerical, not %sCouldn't bind socket to %d: %sCouldn't dupe socket in netFileFromSocketCouldn't fdopen socket in netFileFromSocket'%s' is not a properly formatted subnet. Subnets must consist of one to three dot-separated numbers between 0 and 255 ftp server response timed out > %ld microsecftp server error on cmd=[%s] response=[%s] PASV reply does not parse correctlySorry, can only netOpen ftp's currentlySorry, can only netOpen http's currentlySorry, can only netOpen http and ftp currentlyhttp header line too long > %d chars.Your URL "%s" resulted in a redirect message (HTTP status code %s %s).
Sorry, redirects are not supported. Redirection location: %sTrying to send a string longer than 255 bytes (%d bytes)Couldn't send string to socketTrying to send a string longer than 64k bytes (%d bytes)Couldn't send long string to socketCouldn't send huge string to socketCouldn't read long string lengthCouldn't read long string bodyCouldn't read huge string lengthCouldn't read huge string bodyUser-Agent: genome.ucsc.edu/net.c $Id: nib.c,v 1.24 2007/03/13 20:43:05 kent Exp $nibInputnibOutput:%u-%u%c/%s0/%s%s/%s/%sCan't open %s to read: %s%s is not a good .nib file.nib.cstart >= 0size >= 0(NULL)Read error 1 in %sRead error 2 in %sRead error 3 in %sWriting %d bases in %d bytes Couldn't write all of %s%s:%d-%dwb.NIB%s/%s.nibcan't parse nib file subsequence specification: %snib read past end of file (%d %d) in file: %s$Id: obscure.c,v 1.44 2007/03/02 00:45:01 kent Exp $dotForUserInitr+bCouldn't open %s. %s Write error on %s. %s file read failedfile write failedUnmatched %cmissing closing %c in %s%lld,%03lld,%03lld,%03lld%lld,%03lld,%03lld%lld,%03lld%lldobscure.cdotMod > 0line %d of custom input: variable needs to start with letter '%s'line %d of var %s in custom input: %s missing = in var/val pairline %d of input: missing closing %c$Id: options.c,v 1.24 2005/12/12 04:03:40 kent Exp $verbose-%s is not a valid optionboolean option -%s must not have valuestring option -%s must have a valueint option -%s must have a valuevalue of -%s is not a valid integer: "%s"value of -%s is not a valid long long: "%s"float option -%s must have a valuevalue of -%s is not a valid float: "%s"double option -%s must have a valuevalue of -%s is not a valid double: "%s"bug: invalid type in optionSpec for %sUNIMPLEMENTED: multiple instances of a non-string option is not currently implementedoptGet called before optionHashERROR: optionVal cannot be used to get the value of an OPTION_MULTIERROR: optionMultiVal can only be used after optionInit is called with a non-NULL optionSpecsMissing required command line flag %s$Id: osunix.c,v 1.31 2007/01/30 19:43:46 kate Exp $No current directoryUnable to set dir %sCouldn't make directory %sstat failed in listDirXHTTP_HOSTunknownmysqlHostMYSQLHOST%s_%s_%x_%x%s/%s%d%sUnable to forkCouldn't do tcgetattrCouldn't do tcsetattrI/O errorCouldn't do tcsetattr2fstat failedstat failed in fileModTime: %scan't get user name for uid %dcan't create pipeclose failed on fd %d | can't dup2 to stdincan't dup2 to stdoutcan't dup2 to stderrexec failed: %spipeline.c[mem]no commands in pipelinecan't forkfdopen failed for: %swrite failed to pipeline: %s close failed on pipeline: %s
failed to set SIGPIPE to SIG_IGNpipeline input buffer write failedpipeline input buffer short write %lld, expected %lldprocess lost for: "%s" in pipeline "%s"process terminated on signal %d: "%s" in pipeline "%s"((((__extension__ ({ union { __typeof(proc->status) __in; int __i; } __u; __u.__in = (proc->status); __u.__i; }))) & 0x7f) == 0)process exited with %d: "%s" in pipeline "%s"can't open for read access: %scan't open for write access: %smust specify one of pipelineRead or pipelineWrite to pipelineOpenpipelineOpenMem only supports read pipelines at this timecan't call pipelineFile after having associated a lineFile with a pipelinecan't call pipelineLineFile after having associated a FILE with a pipelinecan't associated a lineFile with a write pipelineread failed from pipeline: %s plProcWait$Id: psl.c,v 1.76 2007/03/04 20:24:19 kent Exp $pslLoad:BM`rRzj}zjreadPslToBinKeeperaddBlockpslNewCREATE TABLE %s ( %smatches int unsigned not null, # Number of bases that match that aren't repeats misMatches int unsigned not null, # Number of bases that don't match repMatches int unsigned not null, # Number of bases that match but are part of repeats nCount int unsigned not null, # Number of 'N' bases qNumInsert int unsigned not null, # Number of inserts in query qBaseInsert int unsigned not null, # Number of bases inserted in query tNumInsert int unsigned not null, # Number of inserts in target tBaseInsert int unsigned not null, # Number of bases inserted in target strand char(2) not null, # + or - for strand. First character is query, second is target. qName varchar(255) not null, # Query sequence name qSize int unsigned not null, # Query sequence size qStart int unsigned not null, # Alignment start position in query qEnd int unsigned not null, # Alignment end position in query tName varchar(255) not null, # Target sequence name tSize int unsigned not null, # Target sequence size tStart int unsigned not null, # Alignment start position in target tEnd int unsigned not null, # Alignment end position in target blockCount int unsigned not null, # Number of blocks in alignment blockSizes longblob not null, # Size of each block qStarts longblob not null, # Start of each block in query. tStarts longblob not null, # Start of each block in target. #Indices %sINDEX(qName(12)) ) sizeOne bloxksizes %d bs %d block=%s match mis- rep. N's Q gap Q gap T gap T gap strand Q Q Q Q T T T T block blockSizes qStarts tStarts match match count bases count bases name size start end name size start end count --------------------------------------------------------------------------------------------------------------------------------------------------------------- %s is version %s of psLayout, this program can only handle through version 4Bad line %d of %s wordCount is %d instead of 21 or 23 pslWeightedIntronOrientation doesn't support a negative target strand size %d, qStart %d, tStart %d pslGetCreateSql: must specify PSL_TNAMEIX with tNameIdxLen > 0bin smallint unsigned not null, Error: invalid PSL: %s:%u-%u %s:%u-%u %s %s %s %s block %u end %u > %cSize %u %s %s block %u start %u < %cStart %u %s %s block %u start %u >= %cEnd %u %s %s block %u end %u < %cStart %u %s %s block %u end %u > %cEnd %u %s %s block %u start %u < previous block end %u Duplicate %s, ignoring all but first query and target alignment strings are different lengthspsl.csizeOne == ret->blockCountsizeOne qStarts %d bs %d sizeOne tStarts %d bs %d Error writing psl file MatchesMismatchesMatches in repeatsNumber of N basesQuery nameChromosomeStrand%s: %s: %u%cchrpsLayout version 4 %s %s psLayout version 3 %s is emptypsLayout version%s is not a psLayout file%s severely truncated
psl %s:%d-%d %s %s:%d-%d %d
INDEX(tName(%d),bin), INDEX(bin), qSeq longblob not null, tSeq longblob not null, %s %cStart %u >= %cEnd %u %s %cEnd %u >= %cSize %u +++--+-- invalid PSL strand: "%s" targetsize > 1(qe-qs) == (te-ts)blockSpace > 0@@$Id: rbTree.c,v 1.10 2007/02/24 15:59:29 kent Exp $%c rbTreeDump $Id: repMask.c,v 1.6 2005/04/10 14:41:25 markd Exp $WARNING: negative rEnd: %d %s:%d-%d %s%f$Id: sqlNum.c,v 1.16 2005/12/09 22:39:36 hiram Exp $invalid unsigned number: "%s"invalid signed number: "%s"invalid float: %sinvalid double: %s$Id: sqlList.c,v 1.19 2006/07/17 19:35:30 markd Exp $%f,%u,%c,%lld,%s,Unterminated stringExpecting comma after stringExpecting %c got %c (%d) in database$Id: twoBit.c,v 1.22 2006/07/31 22:18:22 angie Exp $twoBitReadSeqFragExtname %s too long%s is truncated%s is not in %stwoBit.cpEnd <= 4pStart >= 0.2bit%s %d %d Error in faToTwoBit, index overflow at %s. The 2bit format does not support indexes larger than %dGb, please split up into smaller files. %s doesn't have a valid twoBitSigCan only handle version 0 of this file. This is version %dtwoBitReadSeqFrag in %s end (%d) >= seqSize (%d)twoBitReadSeqFrag in %s start (%d) >= end (%d)invalid twoBit sequence specification: "%s"$Id: verbose.c,v 1.5 2005/10/17 15:46:41 markd Exp $emacsTERMdumb$Id: wildcmp.c,v 1.5 2003/05/06 07:33:44 kate Exp $ABCDEFGHIJKLMNOPQRSTUVWXYZabcdefghijklmnopqrstuvwxyz0123456789+/$Id: internet.c,v 1.10 2005/04/10 14:41:23 markd Exp $Couldn't find host %s. h_errno %dconversion problem on 0x%x in internetIpToDottedQuad: %sinternetDottedQuadToIp problem on %s: %s%s is not a dotted quad;,zR| |PAB E6 t 8Rhh؄  ̑ o\ooj•ҕ"2BRbr–Җ"2BRbr—җ"2BRbr˜Ҙ"2BRbr™ҙ"2BRbršҚ"2BRbr›қ"2BRbr  .@V@RrtRRRRRRRRRRS SSSX S1S6S= 62 # Entropy = 0.6979, Expected = -0.5209 A R N D C Q E G H I L K M F P S T W Y V B Z X * A 4 -1 -2 -2 0 -1 -1 0 -2 -1 -1 -1 -1 -2 -1 1 0 -3 -2 0 -2 -1 0 -4 R -1 5 0 -2 -3 1 0 -2 0 -3 -2 2 -1 -3 -2 -1 -1 -3 -2 -3 -1 0 -1 -4 N -2 0 6 1 -3 0 0 0 1 -3 -3 0 -2 -3 -2 1 0 -4 -2 -3 3 0 -1 -4 D -2 -2 1 6 -3 0 2 -1 -1 -3 -4 -1 -3 -3 -1 0 -1 -4 -3 -3 4 1 -1 -4 C 0 -3 -3 -3 9 -3 -4 -3 -3 -1 -1 -3 -1 -2 -3 -1 -1 -2 -2 -1 -3 -3 -2 -4 Q -1 1 0 0 -3 5 2 -2 0 -3 -2 1 0 -3 -1 0 -1 -2 -1 -2 0 3 -1 -4 E -1 0 0 2 -4 2 5 -2 0 -3 -3 1 -2 -3 -1 0 -1 -3 -2 -2 1 4 -1 -4 G 0 -2 0 -1 -3 -2 -2 6 -2 -4 -4 -2 -3 -3 -2 0 -2 -2 -3 -3 -1 -2 -1 -4 H -2 0 1 -1 -3 0 0 -2 8 -3 -3 -1 -2 -1 -2 -1 -2 -2 2 -3 0 0 -1 -4 I -1 -3 -3 -3 -1 -3 -3 -4 -3 4 2 -3 1 0 -3 -2 -1 -3 -1 3 -3 -3 -1 -4 L -1 -2 -3 -4 -1 -2 -3 -4 -3 2 4 -2 2 0 -3 -2 -1 -2 -1 1 -4 -3 -1 -4 K -1 2 0 -1 -3 1 1 -2 -1 -3 -2 5 -1 -3 -1 0 -1 -3 -2 -2 0 1 -1 -4 M -1 -1 -2 -3 -1 0 -2 -3 -2 1 2 -1 5 0 -2 -1 -1 -1 -1 1 -3 -1 -1 -4 F -2 -3 -3 -3 -2 -3 -3 -3 -1 0 0 -3 0 6 -4 -2 -2 1 3 -1 -3 -3 -1 -4 P -1 -2 -2 -1 -3 -1 -1 -2 -2 -3 -3 -1 -2 -4 7 -1 -1 -4 -3 -2 -2 -1 -2 -4 S 1 -1 1 0 -1 0 0 0 -1 -2 -2 0 -1 -2 -1 4 1 -3 -2 -2 0 0 0 -4 T 0 -1 0 -1 -1 -1 -1 -2 -2 -1 -1 -1 -1 -2 -1 1 5 -2 -2 0 -1 -1 0 -4 W -3 -3 -4 -4 -2 -2 -3 -2 -2 -3 -2 -3 -1 1 -4 -3 -2 11 2 -3 -4 -3 -2 -4 Y -2 -2 -2 -3 -2 -1 -2 -3 2 -1 -1 -2 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